IMIS - Marine Onderzoeksgroepen | Compendium Kust en Zee

IMIS - Marine Onderzoeksgroepen

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Marine Bacterioplankton Database
Contact: Gasol, Josep

Beschikbaarheid: Beschikbaar onder voorwaarden
The data are withheld from general circulation and disclosure but access may be obtained on a case-by-case basis through negotiation

Nota: Release with permission of the appropriate parties

Beschrijving
Here you will find specific information on marine bacterioplankton and their global distribution via a map tool. This database was established to provide environmental data related to bacterioplankton ribosomal DNA sequences. meer

This information is organized in two layouts: 1) In the database, a subset of GenBank records of 16S rRNA gene sequences is available for general browsing. The sequences were assembled into contigs corresponding to metagenes of likely ribotypes (for more information, read this). Each of the sequence included in the contigs can be accessed separately. You can compare your own sequences to this database using the local BLAST tool You are welcome to submit additional information (sampling coordinates, depth and time) to existing records, but you can also submit new sequences not yet included. 2) The map tool allows you to display global and regional distribution information of similar bacterioplankton ribotypes.

Scope
Thema's:
Biologie > Plankton
Kernwoorden:
Marien/Kust, Bacterioplankton, Ribosomes, RNA, World Waters, Bacteria

Geografische spreiding
World Waters [Marine Regions]

Taxonomic coverage
Bacteria [WoRMS]

Parameter
116S Ribosomal DNA sequence

Bijdrage door
Spanish Council for Scientific Research; Institute of Marine Sciences; Departament de Recursos Marins Renovables (CMIMA-CSIC), meer

Publicatie
Beschrijft deze dataset
Hagström, Å. et al. (2002). Use of 16S Ribosomal DNA for Delineation of Marine Bacterioplankton Species. Appl. Environ. Microbiol. 68(7): 3628-3633. http://dx.doi.org/10.1128/AEM.68.7.3628-3633.2002, meer

Dataset status: Gestart
Data type: Data
Data oorsprong: Data collectie
Metadatarecord aangemaakt: 2005-02-04
Informatie laatst gewijzigd: 2005-02-04
Alle informatie in het Integrated Marine Information System (IMIS) valt onder het VLIZ Privacy beleid