IMIS - Marine Onderzoeksgroepen

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Marine Microbiology and Biogeochemistry (NIOZ-MMB)

Organisatie
Publicaties (868)

Overkoepelend instituut: Koninklijk Nederlands Instituut voor Onderzoek der Zee; NIOZ Texel (NIOZ), meer

( 781 peer reviewed )

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Alter, K.; Jacobs, P.; Delre, A.; Rasch, B.; Philippart, C.J.M.; Peck, M.A. (2024). Oyster larvae used for ecosystem restoration benefit from increased thermal fluctuation. Mar. Pollut. Bull. 198: 115750. https://dx.doi.org/10.1016/j.marpolbul.2023.115750, meer
Baxter, A.J.; Peterse, F.; Verschuren, D.; Maitituerdi, A.; Waldmann, N.; Sinninghe Damsté, J.S. (2024). Disentangling influences of climate variability and lake-system evolution on climate proxies derived from isoprenoid and branched glycerol dialkyl glycerol tetraethers (GDGTs): the 250 kyr Lake Chala record. Biogeosciences 21(11): 2877-2908. https://dx.doi.org/10.5194/bg-21-2877-2024, meer
Bolhuis, H.; Grego, M. (2024). Cryopreservation and recovery of a complex hypersaline microbial mat community. Cryobiology 114: 104859. https://dx.doi.org/10.1016/j.cryobiol.2024.104859, meer
Bravo, H.; Dromard, C.R.; van der Meer, M.T.J.; Schleimer, A.; van der Meij, S.E.T. (2024). Dining on corals: stable isotope evidence for close trophic connection between gall crabs (Cryptochiridae) and their stony coral hosts. Symbiosis 92(1): 51-62. https://dx.doi.org/10.1007/s13199-023-00968-y, meer
Campana, S.; Arts, M.G.I.; Díez-Vives, C.; Mueller, B.; Bang, C.; Riesgo, A.; Haas, A.F.; Muyzer, G.; de Goeij, J.M. (2024). Sponges on shifting reefs: holobionts show similar molecular and physiological responses to coral versus macroalgal food. Front. Mar. Sci. 11: 1298922. https://dx.doi.org/10.3389/fmars.2024.1298922, meer
Chen, S.; Xie, Z.-X.; Yan, K.-Q.; Chen, J.-W.; Li, D.-X.; Wu, P.-F.; Peng, L.; Lin, L.; Dong, C.-M.; Zhao, Z.; Fan, G.-Y.; Liu, S.-Q.; Herndl, G.; Wang, D.-Z. (2024). Functional vertical connectivity of microbial communities in the ocean. Science Advances 10(21): eadj8184. https://dx.doi.org/10.1126/sciadv.adj8184, meer
de Groot, T.; Kalenitchenko, D.; Moser, M.; Argentino, C.; Panieri, G.; Lindgren, M.; Dølven, K.O.; Ferré, B.; Svenning, M.M.; Niemann, H. (2024). Methanotroph activity and connectivity between two seep systems north off Svalbard. Front. Earth Sci. 12: 1287226. https://dx.doi.org/10.3389/feart.2024.1287226, meer
de Vogel, F.A.; Goudriaan, M.; Zettler, E.R.; Niemann, H.; Eich, A.; Weber, M.; Lott, C.; Amaral-Zettler, L.A. (2024). Biodegradable plastics in Mediterranean coastal environments feature contrasting microbial succession. Sci. Total Environ. 928: 172288. https://dx.doi.org/10.1016/j.scitotenv.2024.172288, meer
Ding, S.; Grossi, V.; Hopmans, E.C.; Bale, N.J.; Cravo-Laureau, C.; Sinninghe Damsté, J.S. (2024). Nitrogen and sulfur for phosphorus: Lipidome adaptation of anaerobic sulfate-reducing bacteria in phosphorus-deprived conditions. Proc. Natl. Acad. Sci. U.S.A. 121(24): e2400711121. https://dx.doi.org/10.1073/pnas.2400711121, meer
Ding, S.; Hamm, J.N.; Bale, N.J.; Sinninghe Damsté, J.S.; Spang, A. (2024). Selective lipid recruitment by an archaeal DPANN symbiont from its host. Nature Comm. 15(1): 3405. https://dx.doi.org/10.1038/s41467-024-47750-2, meer
Egas, R.A.; Sahonero Canavesi, D.; Bale, N.J.; Koenen, M.; Yildiz, C.; Villanueva, L.; Sousa, D.Z.; Sánchez-Andrea, I. (2024). Acetic acid stress response of the acidophilic sulfate reducer Acididesulfobacillus acetoxydans. Environ. Microbiol. 26(2): e16565. https://dx.doi.org/10.1111/1462-2920.16565, meer
Ersoy, S.; Beardsworth, C.E; Duran, E.; van der Meer, M.T.J.; Piersma, T.; Groothuis, T.G.G.; Bijleveld, A. (2024). Pathway for personality development: juvenile red knots vary more in diet and exploratory behaviour than adults. Anim. Behav. 208: 31-40. https://dx.doi.org/10.1016/j.anbehav.2023.11.018, meer
Fadeev, E.; Hennenfeind, J.H.; Amano, C.; Zhao, Z.; Klun, K.; Herndl, G.; Tinta, T. (2024). Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter. Appl. Environ. Microbiol. 9(2). https://dx.doi.org/10.1128/msystems.01264-23, meer
Goudriaan, M.; Zeghal, E.; Witte, H.J.; Vaksmaa, A.; Niemann, H. (2024). Differentiation of bacterial communities on five common plastics after six days of exposure to Caribbean coastal waters. Environmental Advances 16: 100518. https://dx.doi.org/10.1016/j.envadv.2024.100518, meer
Greening, C.; Cabotaje, P.R.; Valentin A., L.E.; Leung, P.M.; Land, H.; Rodrigues-Oliveira, T.; Ponce-Toledo, R.I.; Senger, M.; Klamke, M.A.; Milton, M.; Lappan, R.; Mullen, S.; West-Roberts, J.; Mao, J.; Song, J.; Schoelmerich, M.; Stairs, C.W.; Schleper, C.; Grinter, R.; Spang, A.; Banfield, J.F.; Berggren, G. (2024). Minimal and hybrid hydrogenases are active from archaea. Cell 187(13): 3357-3372.e19. https://dx.doi.org/10.1016/j.cell.2024.05.032, meer
Hopmans, E.C.; Grossi, V.; Sahonero Canavesi, D.; Bale, N.J.; Cravo-Laureau, C.; Sinninghe Damsté, J.S (2024). Mono- to tetra-alkyl ether cardiolipins in a mesophilic, sulfate-reducing bacterium identified by UHPLC-HRMSn: a novel class of membrane lipids. Front. Microbiol. 15: 1404328. https://dx.doi.org/10.3389/fmicb.2024.1404328, meer
Karancz, S.; de Nooijer, L.J.; Brummer, G.-J.; Lattaud, J.; Haghipour, N.; Rosenthal, Y.; Reichart, G.-J. (2024). Impact of seawater inorganic carbon chemistry on element incorporation in foraminiferal shell carbonate. Geochem. Geophys. Geosyst. 25(4): e2023GC011302. https://dx.doi.org/10.1029/2023gc011302, meer
Koppelle, S.; Ivankovic, M.; Bengtsson, M.M.; Preiler, C.; Huisman, J.; Brussaard, C.; Engelmann, J.C.; Ptacnik, R.; Wilken, S. (2024). Contrasting responses of different mixotrophic protists to light and nutrient availability. Limnol. Oceanogr. 69(5): 1233-1246. https://dx.doi.org/10.1002/lno.12565, meer
Martin, C.; Richter, N.; Lloren, R.; Dubois, N. (2024). Impact of saponification and silver-nitrate purification on lacustrine alkenone distributions and alkenone-based indices. J. Chromatogr. 1715: 464576. https://dx.doi.org/10.1016/j.chroma.2023.464576, meer
Martin, C.; Richter, N.; Lloren, R.; Amaral-Zettler, L.; Dubois, N. (2024). Machine learning reveals that sodium concentration and temperature influence alkenone occurrence in Swiss and worldwide freshwater lakes. Front. Earth Sci. 12: 1409389. https://dx.doi.org/10.3389/feart.2024.1409389, meer
Masdeu-Navarro, M.; Mangot, J.-F.; Xue, L.; Cabrera-Brufau, M.; Kieber, D.J.; Rodriguez-Ros, P.; Gardner, S.G.; Bergauer, K.; Herndl, G.; Marrasé, C.; Simó, R. (2024). Diel variation of seawater volatile organic compounds, DMSP-related compounds, and microbial plankton inside and outside a tropical coral reef ecosystem. Front. Mar. Sci. 11: 1341619. https://dx.doi.org/10.3389/fmars.2024.1341619, meer
Mendonça, I.R.W.; Theirlynck, T.; Zettler, E.R.; Amaral-Zettler, L.A.; Oliveira, M.C. (2024). Microbiome changes in a stranding simulation of the holopelagic macroalgae Sargassum natans and Sargassum fluitans. Ocean and Coastal Research 72: e24037. https://dx.doi.org/10.1590/2675-2824072.23111, meer
Meyer, V.D.; Pätzold, J.; Mollenhauer, G.; Castañeda, I.S; Schouten, S.; Schefuß, E. (2024). Evolution of winter precipitation in the Nile river watershed since the last glacial. Clim. Past 20(3): 523-546. https://dx.doi.org/10.5194/cp-20-523-2024, meer
Moros, M.; Kotilainen, A.T.; Snowball, I.; Neumann, T.; Perner, Kerstin; Meier, H.E.M.; Papenmeier, S.; Kolling, H.; Leipe, T.; Sinninghe Damsté, J.S.; Schneider, R. (2024). Giant saltwater inflow in AD 1951 triggered Baltic Sea hypoxia. Boreas 53(2): 125-138. https://dx.doi.org/10.1111/bor.12643, meer
Orel, N.; Fadeev, E.; Herndl, G.J.; Turk, V.; Tinta, T. (2024). Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbellii. BMC Genom. 25(1). https://dx.doi.org/10.1186/s12864-024-10062-2, meer
Peng, X.F.; Amend, A.S.; Baltar, F.; Blanco-Bercial, L.; Breyer, E.; Burgaud, G.; Cunliffe, M.; Edgcomb, V.P.; Grossart, H.-P.; Mara, P.; Masigol, H.; Pang, K.-L.; Retter, A.; Roberts, C.; van Bleijswijk, J.; Walker, A.K.; Whitner, S. (2024). Planktonic Marine Fungi: A Review. JGR: Biogeosciences 129(3): e2023JG007887. https://dx.doi.org/10.1029/2023jg007887, meer
Rodríguez-Mejía, J.L.; Hidalgo-Manzano, I.A.; Muriel-Millán, L.F.; Rivera-Gomez, N.; Sahonero Canavesi, D.; Castillo, E.; Pardo-Lopez, L. (2024). A novel thermo-alkaline stable GDSL/SGNH esterase with broad substrate specificity from a deep-sea Pseudomonas sp. Mar. Biotechnol. 26(3): 447-459. https://dx.doi.org/10.1007/s10126-024-10308-w, meer
Salazar Alekseyeva, K.; Herndl, G.; Baltar, F. (2024). Influence of salinity on the extracellular enzymatic activities of marine pelagic fungi. Journal of Fungi 10(2): 152. https://dx.doi.org/10.3390/jof10020152, meer
Si, W.; Novak, J.; Richter, N.; Polissar, P.; Ma, R.; Santos, E.; Nirenberg, J.; Herbert, T.D.; Aubry, M.-P. (2024). Alkenone-derived estimates of Cretaceous pCO2. Geology (Boulder Colo.) 52(7): 555-559. https://dx.doi.org/10.1130/g51939.1, meer
Sorokin, D.Y.; Elcheninov, A.G.; Bale, N.; Sininghe Damsté, J. ; Kublanov, I.V. (2024). Natronosalvus hydrolyticus sp. nov., a beta-1,3-glucan utilizing natronoarchaeon from hypersaline soda lakes. Syst. Appl. Microbiol. 47(2-3): 126514. https://dx.doi.org/10.1016/j.syapm.2024.126514, meer
Sorokin, D.Y.; Elcheninov, A.G.; Bale, N.J.; Sinninghe Damsté, J.S; Kublanov, I.V. (2024). Natronoglomus mannanivorans gen. nov., sp. nov., beta-1,4-mannan utilizing natronoarchaea from hypersaline soda lakes. Front. Microbiol. 15: 1364606. https://dx.doi.org/10.3389/fmicb.2024.1364606, meer
Sparagon, W.J.; Arts, M.G.I.; Quinlan, Z.A.; Wegley Kelly, L.; Koester, I.; Comstock, J.; Bullington, J.A.; Carlson, C.A.; Dorrestein, P.C.; Aluwihare, L.I.; Haas, A.F.; Nelson, C.E. (2024). Coral thermal stress and bleaching enrich and restructure reef microbial communities via altered organic matter exudation. Communications Biology 7(1): 160. https://dx.doi.org/10.1038/s42003-023-05730-0, meer
Thobor, B.M.; Tilstra, A.; Mueller, B.; Haas, A.; Hehemann, J.-H.; Wild, C. (2024). Mucus carbohydrate composition correlates with scleractinian coral phylogeny. NPG Scientific Reports 14(1): 14019. https://dx.doi.org/10.1038/s41598-024-64828-5, meer
Thompson, C.; Ortmann, A.C.; Bolhuis, H.; Makhalanyane, T.P.; Thompson, F. (2024). Harnessing marine microbiomes to develop a sustainable, all‐Atlantic bioeconomy. International Journal of Advanced Life Sciences 3(2): 163-166. https://dx.doi.org/10.1002/mlf2.12124, meer
Timmis, K.; Hallsworth, J.E.; McGenity, T.J.; Armstrong, R.; Colom, M.F.; Karahan, Z.C.; Chavarría, M.; Bernal, P.; Boyd, E.S.; Ramos, J.L.; Kaltenpoth, M.; Pruzzo, C.; Clarke, G.; López‐Garcia, P.; Yakimov, M.M.; Perlmutter, J.; Greening, C.; Eloe‐Fadrosh, E.; Verstraete, W.; Nunes, O.C.; Kotsyurbenko, O.; Nikel, P.I.; Scavone, P.; Häggblom, M.M.; Lavigne, R.; Le Roux, F.; Timmis, J.K.; Parro, V.; Michán, C.; García, J.L.; Casadevall, A.; Payne, S.M.; Frey, J.; Koren, O.; Prosser, J.I.; Lahti, L.; Lal, R.; Anand, S.; Sood, U.; Offre, P.; Bryce, C.C.; Mswaka, A.Y.; Jores, J.; Kaçar, B.; Blank, L.M.; Maaßen, N.; Pope, P.B.; Banciu, H.L.; Armitage, J.; Lee, S.Y.; Wang, F.; Makhalanyane, T.P.; Gilbert, J.A.; Wood, T.K.; Vasiljevic, B.; Soberón, M.; Udaondo, Z.; Rojo, F.; Tamang, J.P.; Giraud, T.; Ropars, J.; Ezeji, T.; Müller, V.; Danbara, H.; Averhoff, B.; Sessitsch, A.; Partida‐Martínez, L.P.; Huang, W.; Molin, S.; Junier, P.; Amils, R.; Wu, X.; Ron, E.; Erten, H.; de Martinis, E.C.P.; Rapoport, A.; Öpik, M.; Pokatong, W.D.R.; Stairs, C.; Amoozegar, M.A.; Serna, J.G. (2024). A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society. Microbial Biotechnology 17(5): e14456. https://dx.doi.org/10.1111/1751-7915.14456, meer
Ungerhofer, K.A.; Plümper, O.; Preiner, M.; Reichart, G.-J.; Kraal, P. (2024). Coupled carbon‑iron‑phosphorus cycling in the Rainbow hydrothermal vent field. Chem. Geol. 650: 121994. https://dx.doi.org/10.1016/j.chemgeo.2024.121994, meer
Vaksmaa, A.; Vielfaure, H.; Polerecky, L.; Kienhuis, M.V.M.; van der Meer, M.T.J.; Pflüger, T.; Egger, M.; Niemann, H. (2024). Biodegradation of polyethylene by the marine fungus Parengyodontium album. Sci. Total Environ. 934: 172819. https://dx.doi.org/10.1016/j.scitotenv.2024.172819, meer
van Kemenade, Z.R.; Erdem, Z.; Hopmans, E.C.; Sinninghe Damsté, J.S; Rush, D. (2024). Loss of nitrogen via anaerobic ammonium oxidation (anammox) in the California Current system during the late Quaternary. Biogeosciences 21(6): 1517-1532. https://dx.doi.org/10.5194/bg-21-1517-2024, meer
Varma, D.; van der Meer, M.T.J.; Reichart, G.-J.; Schouten, S. (2024). Impact of water depth on the distributions and proxies of isoprenoidal hydroxylated GDGTs in the Mediterranean Sea and the Red Sea. Org. Geochem. 194: 104780. https://dx.doi.org/10.1016/j.orggeochem.2024.104780, meer
Varma, D.; Hopmans, E.C.; van Kemenade, Z.R.; Kusch, S.; Berg, S.; Bale, N.J.; Sangiorgi, F.; Reichart, G.-J.; Sinninghe Damsté, J.S; Schouten, S. (2024). Evaluating isoprenoidal hydroxylated GDGT-based temperature proxies in surface sediments from the global ocean. Geochim. Cosmochim. Acta 370: 113-127. https://dx.doi.org/10.1016/j.gca.2023.12.019, meer
Wang, K.J.; Huang, Y.; Kartzinel, T.R.; Majaneva, M.; Richter, N.; Liao, S.; Andresen, C.S.; Vermassen, F. (2024). Group 2i Isochrysidales thrive in marine and lacustrine systems with ice cover. NPG Scientific Reports 14(1): 11449. https://dx.doi.org/10.1038/s41598-024-62162-4, meer
Witkowski, C.R.; von der Heydt, A.S.; Valdes, P.J.; van der Meer, M.T.J.; Schouten, S.; Sinninghe Damsté, J.S. (2024). Continuous sterane and phytane δ13C record reveals a substantial pCO2 decline since the mid-Miocene. Nature Comm. 15(1): 5192. https://dx.doi.org/10.1038/s41467-024-47676-9, meer
Wu, L.-Y.; Wijesekara, Y.; Piedade, G.; Pappas, N.; Brussaard, C.P.D.; Dutilh, B.E. (2024). Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Genome Biol. 25(1): 97. https://dx.doi.org/10.1186/s13059-024-03236-4, meer
Yadav, S.; Koenen, M.; Bale, N.; Reitsma, W.; Engelmann, J.C.; Stefanova, K.; Sinninghe Damsté, J.S; Villanueva, L. (2024). Organic matter degradation in the deep, sulfidic waters of the Black Sea: insights into the ecophysiology of novel anaerobic bacteria. Microbiome 12(1): 98. https://dx.doi.org/10.1186/s40168-024-01816-x, meer
Zhang, X.; Wang, Y.; Wang, Z.; Zhao, M.; Fang, Y.; Ding, S.; Xiao, W.; Yu, C.; Wang, X.; Xu, Y. (2024). Heterogenous distribution and burial flux of black carbon in Chinese lakes and its global implication. Sci. Total Environ. 906: 167687. https://dx.doi.org/10.1016/j.scitotenv.2023.167687, meer
Zhao, Z.; Amano, C.; Reinthaler, T.; Orellana, M.V.; Herndl, G. (2024). Substrate uptake patterns shape niche separation in marine prokaryotic microbiome. Science Advances 10(20): eadn5143. https://dx.doi.org/10.1126/sciadv.adn5143, meer
Zhao, Z.; Baltar, F.; Herndl, G. (2024). Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes. Environ. Microbiol. 12(5). https://dx.doi.org/10.1128/spectrum.03036-23, meer
Zhemchuzhnikov, M.K.; Zhemchuzhnikova, E.A.; Lameris, T.K.; van Bleijswijk, J.D.L.; Golovnyuk, V.V.; ten Horn, J.; Kutcherov, D.; Popovkina, A.B.; Soloviev, M.Y.; Sukhova, M.A.; Witte, H.J.; van Gils, J.A. (2024). Disentangling the diet composition of chicks of Arctic shorebirds provides a new perspective on trophic mismatches. Food Webs 39: e00349. https://dx.doi.org/10.1016/j.fooweb.2024.e00349, meer
Zuffa, S.; Schmid, R.; Bauermeister, A.; P. Gomes, P.W.; Caraballo-Rodriguez, A.M.; El Abiead, Y.; Aron, A.T.; Gentry, E.C.; Zemlin, J.; Meehan, M.J.; Avalon, N.E.; Cichewicz, R.H.; Buzun, E.; Terrazas, M.C.; Hsu, C.-Y.; Oles, R.; Ayala, A.V.; Zhao, J.; Chu, H.; Kuijpers, M.C.M.; Jackrel, S.L.; Tugizimana, F.; Nephali, L.P.; Dubery, I.A.; Madala, N.E.; Moreira, E.A.; Costa-Lotufo, L.V.; Lopes, N.P.; Rezende-Teixeira, P.; Jimenez, P.C.; Rimal, B.; Patterson, A.D.; Traxler, M.F.; Pessotti, R. de Cassia; Alvarado-Villalobos, D.; Tamayo-Castillo, G.; Chaverri, P.; Escudero-Leyva, E.; Quiros-Guerrero, L.-M.; Bory, A.J.; Joubert, J.; Rutz, A.; Wolfender, J.-L.; Allard, P.-M.; Sichert, A.; Pontrelli, S.; Pullman, B.S.; Bandeira, N.; Gerwick, W.H.; Gindro, K.; Massana-Codina, J.; Wagner, B.C.; Forchhammer, K.; Petras, D.; Aiosa, N.; Garg, N.; Liebeke, M.; Bourceau, P.; Kang, K.B.; Gadhavi, H.; de Carvalho, L.P.S.; Silva dos Santos, M.; Pérez-Lorente, A.I.; Molina-Santiago, C.; Romero, D.; Franke, R.; Brönstrup, M.; Vera Ponce de León, A.; Pope, P.B.; La Rosa, S.L.; La Barbera, G.; Roager, H.M.; Laursen, M.F.; Hammerle, F.; Siewert, B.; Peintner, U.; Licona-Cassani, C.; Rodriguez-Orduña, L.; Rampler, E.; Hildebrand, F.; Koellensperger, G.; Schoeny, H.; Hohenwallner, K.; Panzenboeck, L.; Gregor, R.; O’Neill, E.C.; Roxborough, E.T.; Odoi, J.; Bale, N.J.; Ding, S.; Sinninghe Damsté, J.S.; Guan, X.L.; Cui, J.J.; Ju, K.-S.; Silva, D.B.; Silva, F.M.R.; da Silva, G.F.; Koolen, H.H.F.; Grundmann, C.; Clement, J.A.; Mohimani, H.; Broders, K.; McPhail, K.L.; Ober-Singleton, S.E.; Rath, C.M.; McDonald, D.; Knight, R.; Wang, M.; Dorrestein, P.C. (2024). microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data. Nature Microbiology 9(2): 336-345. https://dx.doi.org/10.1038/s41564-023-01575-9, meer
Amano, C.; Reinthaler, T.; Sintes, E.; Varela, M.M.; Stefanschitz, J.; Kaneko, S.; Nakano, Y.; Borchert, W.; Herndl, G.J.; Utsumi, M. (2023). A device for assessing microbial activity under ambient hydrostatic pressure: The in situ microbial incubator (ISMI). Limnol. Oceanogr., Methods 21(2): 69-81. https://dx.doi.org/10.1002/lom3.10528, meer
Aylward, F.O.; Abrahão, J.S.; Brussaard, C.P.D.; Fischer, M.G.; Moniruzzaman, M.; Ogata, H.; Suttle, C.A. (2023). Taxonomic update for giant viruses in the order Imitervirales (phylum Nucleocytoviricota). Archives of Virology 168(11): 283. https://dx.doi.org/10.1007/s00705-023-05906-3, meer
Baer, J.L.; Carilli, J.; Chadwick, B.; Hatay, M.; van der Geer, A.; Scholten, Y.; Barnes, W.; Aquino, J.; Ballard, A.; Little, M.; Brzenski, J.; Liu, X.; Rosen, G.; Wang, P.-F.; Castillo, J.; Haas, A.F.; Hartmann, A.C.; Rohwer, F. (2023). Coral reef arks: An In Situ mesocosm and toolkit for assembling reef communities. Jove-Journal of Visualized Experiments 191: e64778. https://dx.doi.org/10.3791/64778, meer
Baltar, F.; Martínez-Pérez, C.; Amano, C.; Vial, M.; Robaina-Estévez, S.; Reinthaler, T.; Herndl, G.; Zhao, Z.; Logares, R.; Morales, S.E.; González, J.M. (2023). A ubiquitous gammaproteobacterial clade dominates expression of sulfur oxidation genes across the mesopelagic ocean. Nature Microbiology 8(6): 1137-1148. https://dx.doi.org/10.1038/s41564-023-01374-2, meer
Baxter, A.J.; Verschuren, D.; Peterse, F.; Miralles, D.G.; Martin-Jones, C.M.; Maitituerdi, A.; Van der Meeren, T.; Van Daele, M.; Lane, C.S.; Haug, G.H.; Olago, D.O.; Sinninghe Damsté, J.S. (2023). Reversed Holocene temperature–moisture relationship in the Horn of Africa. Nature (Lond.) 620(7973): 336-343. https://dx.doi.org/10.1038/s41586-023-06272-5, meer
Beltran, L.C.; Cvirkaite-Krupovic, V.; Miller, J.; Wang, F.; Kreutzberger, M.A.B.; Patkowski, J.B.; Costa, T.R.D.; Schouten, S.; Levental, I.; Conticello, V.P.; Egelman, E.H.; Krupovica, M. (2023). Archaeal DNA-import apparatus is homologous to bacterial conjugation machinery. Nature Comm. 14: 666. https://dx.doi.org/10.1038/s41467-023-36349-8, meer
Beyazay, T.; Belthle, K.S.; Farès, C.; Preiner, M.; Moran, J.; Martin, W.F.; Tüysüz, H. (2023). Ambient temperature CO2 fixation to pyruvate and subsequently to citramalate over iron and nickel nanoparticles. Nature Comm. 14: 570. https://dx.doi.org/10.1038/s41467-023-36088-w, meer
Born-Torrijos, A.; Riekenberg, P.M.; van der Meer, M.T.J.; Nachev, M.; Sures, B.; Thieltges, D.W. (2023). Parasite effects on host’s trophic and isotopic niches. Trends Parasitol. 39(9): 749-759. https://dx.doi.org/10.1016/j.pt.2023.06.003, meer
Bos, R.P.; Kaul, D.; Zettler, E.R.; Hoffman, J.M.; Dupont, C.L.; Amaral-Zettler, L.; Mincer, T.J. (2023). Plastics select for distinct early colonizing microbial populations with reproducible traits across environmental gradients. Environ. Microbiol. 25(12): 2761-2775. https://dx.doi.org/10.1111/1462-2920.16391, meer
Candy, A.S.; Taylor Parkins, S.K.; van Duyl, F.C.; Mueller, B.; Arts, M.G.I.; Barnes, W.; Carstensen, M.; Scholten, Y.; El-Khaled, Y.C.; Wild, C.; Wegley Kelly, L.; Nelson, C.E.; Sandin, S.A.; Vermeij, M.J.A.; Rohwer, F.; Picioreanu, C.; Stocchi, P.; Haas, A.F. (2023). Small-scale oxygen distribution patterns in a coral reef. Front. Mar. Sci. 10. https://dx.doi.org/10.3389/fmars.2023.1135686, meer
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Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2016). The effect of improved chromatography on GDGT-based palaeoproxies. Org. Geochem. 93: 1-6. dx.doi.org/10.1016/j.orggeochem.2015.12.006, meer
Ismail, A.; Ktari, L.; Bolhuis, H.; Ahmed, M.; Boudabbous, A.; Stal, L.J.; Cretoiu, M.S.; El Bour, M. (2016). Antimicrobial Activities of Bacteria Associated with the Brown Alga Padina pavonica. Front. Microbiol. 7: 1072. dx.doi.org/10.3389/fmicb.2016.01072, meer
Johnson, T.C.; Werne, J.P.; Brown, E.T.; Abbott, A.; Berke, M.; Steinman, B.E.; Halbur, J.; Contreras, S.; Grosshuesch, S.; Deino, A.; Lyons, R.P.; Scholz, C.A.; Schouten, S.; Sinninghe Damsté, J.S. (2016). A progressively wetter climate in southern East Africa over the past 1.3 million years. Nature (Lond.) 537(7619): 220-224. dx.doi.org/10.1038/nature19065, meer
Jung, M.Y.; Kim, J.G.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Madsen, E.L.; Kim, S.J.; Hong, H.; Si, O.-J.; Kerou, M.; Schleper, C.; Rhee, S.K. (2016). A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment. Environmental Microbiology Reports 8(6): 983–992. dx.doi.org/10.1111/1758-2229.12477, meer
Kandiano, E.S.; Van der Meer, M.T.J.; Bauch, H.A.; Helmke, J.; Sinninghe Damsté, J.S.; Schouten, S. (2016). A cold and fresh ocean surface in the Nordic Seas during MIS 11: Significance for the future ocean. Geophys. Res. Lett. 43(20): 10,929–10,937. https://dx.doi.org/10.1002/2016GL070294, meer
Kim, J.G.; Park, S.J.; Sinninghe Damsté, J.S.; Schouten, S.; Rijpstra, W.I.C.; Jung, M.Y.; Kim, S.J.; Gwak, J.-H.; Hong, H.; Si, O.-J.; Lee, S.H.; Madsen, E.L.; Rhee, S.K. (2016). Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea. Proc. Natl. Acad. Sci. U.S.A. 113(28): 7888–7893. dx.doi.org/10.1073/pnas.1605501113, meer
Kim, J.-H.; Villanueva, L.; Zell, C.; Sinninghe Damsté, J.S. (2016). Biological source and provenance of deep-water derived isoprenoid tetraether lipids along the Portuguese continental margin. Geochim. Cosmochim. Acta 172: 177–204. dx.doi.org/10.1016/j.gca.2015.09.010, meer
Kulichevskaya, I.S.; Ivanova, A.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2016). Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov. Int. J. Syst. Evol. Microbiol. 66: 837-844. dx.doi.org/ 10.1099/ijsem.0.000799 , meer
Kusch, S.; Rethemeyer, J.; Hopmans, E.C.; Wacker, L.; Mollenhauer, G. (2016). Factors influencing 14C concentrations of algal and archaeal lipids and their associated sea surface temperature proxies in the Black Sea. Geochim. Cosmochim. Acta 188: 35–57. dx.doi.org/10.1016/j.gca.2016.05.025, meer
Levy, R.; Schouten, S.; SMS Sci Team (2016). Antarctic ice sheet sensitivity to atmospheric CO₂ variations in the early to mid-Miocene. Proc. Natl. Acad. Sci. U.S.A. 113(13): 3453–3458. dx.doi.org/10.1073/pnas.1516030113, meer
Lipsewers, Y.A.; Hopmans, E.C.; Meysman, F.J.R.; Sinninghe Damsté, J.S.; Villanueva, L. (2016). Abundance and diversity of denitrifying and anammox bacteria in seasonally hypoxic and sulfidic sediments of the saline Lake Grevelingen. Front. Microbiol. 7: 1661. https://dx.doi.org/10.3389/fmicb.2016.01661, meer
Lüke, C.; Speth, D.R.; Kox, M.A.R.; Villanueva, L.; Jetten, M.S.M. (2016). Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone. PeerJ 4: e1924. dx.doi.org/10.7717/peerj.1924, meer
Maat, D.; Bale, N.J.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S.; Brussaard, C.P.D. (2016). Increasing P limitation and viral infection impact lipid remodeling of the picophytoplankter Micromonas pusilla. Biogeosciences 13(5): 1667-1676. http://dx.doi.org/10.5194/bg-13-1667-2016, meer
Maat, D.S.; van Bleijswijk, J.D.L.; Witte, H.J.; Brussaard, C.P.D. (2016). Virus production in phosphorus-limited Micromonas pusilla stimulated by a supply of naturally low concentrations of different phosphorus sources, far into the lytic cycle. FEMS Microbiol. Ecol. 92: fiw136. dx.doi.org/10.1093/femsec/fiw136, meer
Maat, D.S.; de Blok, R.; Brussaard, C.P.D. (2016). Combined Phosphorus Limitation and Light Stress Prevent Viral Proliferation in the Phytoplankton Species Phaeocystis globosa, but Not in Micromonas pusilla. Front. Mar. Sci. 3: 160. dx.doi.org/10.3389/fmars.2016.00160, meer
Maat, D.S.; Brussaard, C.P.D. (2016). Both phosphorus- and nitrogen limitation constrain viral proliferation in marine phytoplankton. Aquat. Microb. Ecol. 77(2): 87-97. dx.doi.org/10.3354/ame01791, meer
Mao, J.; Nierop, K.G.J.; Rietkerk, M.; Sinninghe Damsté, J.S.; Dekker, S.C. (2016). The influence of vegetation on soil water repellency-markers and soil hydrophobicity. Sci. Total Environ. 566-567: 608-620. dx.doi.org/10.1016/j.scitotenv.2016.05.077, meer
Mojica, K.D.A.; Huisman, J.; Wilhelm, S.W.; Brussaard, C.P.D. (2016). Latitudinal variation in virus-induced mortality of phytoplankton across the North Atlantic Ocean. ISME J. 10(2): 500-513. https://dx.doi.org/10.1038/ismej.2015.130, meer
Moore, E.K.; Hopmans, E.C.; Rijpstra, W.I.C.; Villanueva, L.; Sinninghe Damsté, J.S. (2016). Elucidation and identiﬁcation of amino acid containing membrane lipids using liquid chromatography/high-resolution mass spectrometry. Rapid Comm. Mass Spectrom. 30(6): 739–750. dx.doi.org/10.1002/rcm.7503, meer
Mueller, B.; den Haan, J.; Visser, P.M.; Vermeij, M.J.A.; van Duyl, F.C. (2016). Effect of light and nutrient availability on the release of dissolved organic carbon (DOC) by Caribbean turf algae. NPG Scientific Reports 6: 23248. dx.doi.org/10.1038/srep23248, meer
Nieto-Moreno, V.; Rohrmann, A.; van der Meer, M.T.J.; Sinninghe Damsté, J.S.; Sachse, D.; Tofelde, S.; Niedermeyer, E.M.; Strecker, M.R.; Mulch, A. (2016). Elevation-dependent changes in n-alkane δD and soil GDGTs across the South Central Andes. Earth Planet. Sci. Lett. 453: 234–242. dx.doi.org/10.1016/j.epsl.2016.07.049, meer
Oshkin, I.Y.; Belova, S.E.; Danilova, O.V.; Miroshnikov, K.K.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Liesack, W.; Dedysh, S.N. (2016). Methylovulum psychrotolerans sp. nov., a cold-adapted methanotroph from low-temperature terrestrial environments and emended description of the genus Methylovulum. Int. J. Syst. Evol. Microbiol. 66: 2417-2423. dx.doi.org/ 10.1099/ijsem.0.001046 , meer
Pascal, P.-Y.; Gros, O.; Boschker, H.T.S. (2016). Temporal fluctuations in the trophic role of large benthic sulfur bacteria in mangrove sediment. Food Webs 7: 20-28. dx.doi.org/10.1016/j.fooweb.2016.04.001, meer
Piquet, A.M.-T.; Maat, D.S.; Confurius-Guns, V.; Sintes, E.; Herndl, G.; van de Poll, W.H.; Wiencke, C.; Buma, A.G.J.; Bolhuis, H. (2016). Springtime dynamics, productivity and activity of prokaryotes in two Arctic fjords. Polar Biol. 39: 1749–1763. dx.doi.org/10.1007/s00300-015-1866-x, meer
Rix, L.; de Goeij, J.M.; Mueller, C.E.; Struck, U.; Middelburg, J.J.; van Duyl, F.C.; Al-Horani, F.A.; Wild, C.; Naumann, M.S.; Van Oevelen, D. (2016). Coral mucus fuels the sponge loop in warm- and cold-water coral reef ecosystems. NPG Scientific Reports 6(18715): 11 pp. http://dx.doi.org/10.1038/srep18715, meer
Rodrigo-Gámiz, M.; Rampen, S.W.; Schouten, S.; Sinninghe Damsté, J.S. (2016). The impact of oxic degradation on long chain alkyl diol distributions in Arabian Sea surface sediments. Org. Geochem. 100: 1-9. dx.doi.org/10.1016/j.orggeochem.2016.07.003, meer
Salamanca Villegas, S.; van Soelen, E.; Teunissen van Manen, M.L.; Flantua, S.G.A.; Santos, R.V.; Roddaz, M.; Dantas, E.L.; van Loon, E.; Sinninghe Damsté, J.S.; Kim, J.-H.; Hoorn, C. (2016). Amazon forest dynamics under changing abiotic conditions in the early Miocene (Colombian Amazonia). J. Biogeogr. 43(12): 2424–2437. dx.doi.org/10.1111/jbi.12769, meer
Sciscio, L.; Tsikos, H.; Roberts, D.L.; Scott, L.; van Breugel, Y.; Sinninghe Damsté, J.S.; Schouten, S.; Grocke, D.R. (2016). Miocene climate and vegetation changes in the Cape Peninsula, South Africa: Evidence from biogeochemistry and palynology. Palaeogeogr. Palaeoclimatol. Palaeoecol. 445: 124-137. dx.doi.org/10.1016/j.palaeo.2015.12.014, meer
Sinninghe Damsté, J.S. (2016). Spatial heterogeneity of sources of branched tetraethers in shelf systems: The geochemistry of tetraethers in the Berau River delta (Kalimantan, Indonesia). Geochim. Cosmochim. Acta 186: 13-31. dx.doi.org/10.1016/j.gca.2016.04.033, meer
Sintes, E.; De Corte, D.; Haberleitner, E.; Herndl, G. (2016). Geographic Distribution of Archaeal Ammonia Oxidizing Ecotypes in the Atlantic Ocean. Front. Microbiol. 7: 77. dx.doi.org/10.3389/fmicb.2016.00077, meer
Slagter, H.A.; Gerringa, L.J.A.; Brussaard, C.P.D. (2016). Phytoplankton Virus Production Negatively Affected by Iron Limitation. Front. Mar. Sci. 3: 156. dx.doi.org/10.3389/fmars.2016.00156, meer
Sobrinho, R.L; Bernardes, M.C.; Abril, G.; Kim, J.-H.; Zell, C.I.; Mortillaro, J.M.; Meziane, T.; Moreira-Turcq, P.; Sinninghe Damsté, J.S. (2016). Spatial and seasonal contrasts of sedimentary organic matter in floodplain lakes of the central Amazon basin. Biogeosciences 13: 467-482. dx.doi.org/10.5194/bg-13-467-2016, meer
Sorokin, D.Y.; Rakitin, A.L.; Gumerov, V.M.; Beletsky, A.V.; Sinninghe Damsté, J.S.; Mardanov, A.V.; Ravin, N.V. (2016). Phenotypic and Genomic Properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., A Haloalkaliphilic Anaerobic Chitinolytic Bacterium Representing a Novel Class in the Phylum Fibrobacteres. Front. Microbiol. 7: 407. dx.doi.org/10.3389/fmicb.2016.00407, meer
Sorokin, D.Y.; Kublanov, I.V.; Yakimov, M.M.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S. (2016). Halanaeroarchaeum sulfurireducens gen. nov., sp. nov., the first obligately anaerobic sulfur-respiring haloarchaeon, isolated from a hypersaline lake. Int. J. Syst. Evol. Microbiol. 66(6): 2377-2381. dx.doi.org/10.1099/ijsem.0.001041, meer
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Steenhauer, L.M.; Wierenga, J.; Carreira, C; Limpens, R.W.A.L.; Koster, A.J.; Pollard, P.C.; Brussaard, C.P.D. (2016). Isolation of cyanophage CrV infecting Cylindrospermopsis raciborskii and the influence of temperature and irradiance on CrV proliferation . Aquat. Microb. Ecol. 78: 11-23. dx.doi.org/10.3354/ame01800, meer
Svensson, E.; Schouten, S.; Hopmans, E.C.; Middelburg, J.J.; Sinninghe Damsté, J.S. (2016). Factors Controlling the Stable Nitrogen Isotopic Composition (δ15N) of Lipids in Marine Animals. PLoS One 11(1): e0146321. https://dx.doi.org/10.1371/journal.pone.0146321, meer
van Bree, L.G.J.; Rijpstra, W.I.C.; Al-Dhabi, N.A.; Verschuren, D.; Sinninghe Damsté, J.S.; de Leeuw, J.W. (2016). Des-A-lupane in an East African lake sedimentary record as a new proxy for the stable carbon isotopic composition of C₃ plants. Org. Geochem. 101: 132–139. dx.doi.org/10.1016/j.orggeochem.2016.09.003, meer
van der Meer, R.; de Boer, M.K.; Liebich, V.; ten Hallers, C.; Veldhuis, M.; Ree, K. (2016). Ballast Water Risk Indication for the North Sea. Coast. Manage. 44(6): 547-568. dx.doi.org/10.1080/08920753.2016.1233794, meer
van Soelen, E.; Ohkouchi, N.; Suga, H.; Sinninghe Damsté, J.S.; Reichart, G.-J. (2016). A late Holocene molecular hydrogen isotope record of the East Asian Summer Monsoon in Southwest Japan. Quatern. Res. 86(3): 287–294. dx.doi.org/10.1016/j.yqres.2016.07.005, meer
van Walraven, L.; Driessen, F.; van Bleijswijk, J.; Bol, A.; Luttikhuizen, P.C.; Coolen, J.; Bos, O.G.; Gittenberger, A.; Schrieken, N.; Langenberg, V.T.; van der Veer, H.W. (2016). Where are the polyps? Molecular identification, distribution and population differentiation of Aurelia aurita jellyfish polyps in the southern North Sea area. Mar. Biol. (Berl.) 163: 172. dx.doi.org/10.1007/s00227-016-2945-4, meer
Vasquez Cardenas, D.; Organo Quintana, C.; Meysman, F.J.R.; Kristensen, E.; Boschker, H.T.S. (2016). Species-specific effects of two bioturbating polychaetes on sediment chemoautotrophic bacteria. Mar. Ecol. Prog. Ser. 549: 55-68. dx.doi.org/10.3354/meps11679, meer
Vellekoop, J.; Esmeray-Senlet, S.; Miller, K.G.; Browning, J.V.; Sluijs, A.; van de Schootbrugge, B.; Sinninghe Damsté, J.S.; Brinkhuis, H. (2016). Evidence for Cretaceous-Paleogene boundary bolide “impact winter” conditions from New Jersey, USA. Geology (Boulder Colo.) 44(8): 619-622. https://dx.doi.org/10.1130/G37961.1, meer
Visser, P.M.; Verspagen, J.M.H.; Sandrini, G.; Stal, L.J.; Matthijs, H.C.P.; Davis, T.W.; Pearl, H.W.; Huisman, J. (2016). How rising CO₂ and global warming may stimulate harmful cyanobacterial blooms. Harmful Algae 54: 145–159. dx.doi.org/10.1016/j.hal.2015.12.006, meer
Warden, L.; Van der Meer, M.T.J.; Moros, M.; Sinninghe Damsté, J.S. (2016). Sedimentary alkenone distributions reflect salinity changes in the Baltic Sea over the Holocene. Org. Geochem. 102: 30–44. dx.doi.org/10.1016/j.orggeochem.2016.09.007, meer
Warden, L.; Kim, J.-H; Zell, C.; Vis, G.-J.; de Stigter, H.C.; Bonnin, J.; Sinninghe Damste, J.S. (2016). Examining the provenance of branched GDGTs in the Tagus River drainage basin and its outflow into the Atlantic Ocean over the Holocene to determine their usefulness for paleoclimate applications. Biogeosciences 13: 5719-5738. dx.doi.org/10.5194/bg-13-5719-2016, meer
Webb, A.L.; Leedham-Elvidge, E.; Hughes, C.; Hopkins, F.; Malin, G.; Bach, L.T.; Schulz, K.; Crawfurd, K.; Brussaard, C.P.D.; Stuhr, A.; Riebesell, U.; Liss, P.S. (2016). Effect of ocean acidification and elevated fCO₂ on trace gas production by a Baltic Sea summer phytoplankton community. Biogeosciences 13: 4595–4613. https://dx.doi.org/10.5194/bg-13-4595-2016, meer
Wigington, C.H.; Sonderegger, D.; Brussaard, C.P.D.; Buchan, A.; Finke, J.F.; Fuhrman, J.A.; Lennon, J.T.; Middelboe, M.; Suttle, C.A.; Stock, C.; Wilson, W.H.; Wommack, K.E.; Wilhelm, S.W.; Weitz, J.S. (2016). Re-examination of the relationship between marine virus and microbial cell abundances. Nature Microbiology 1: 15024. https://dx.doi.org/10.1038/NMICROBIOL.2015.24, meer
Arrieta, J.M.; Mayol, E.; Hansman, R.L.; Herndl, G.J.; Dittmar, T.; Duarte, C.M. (2015). Response to Comment on "Dilution limits dissolved organic carbon utilization in the deep ocean". Science (Wash.) 350(6267): 1483-1483. http://dx.doi.org/10.1126/science.aac7249, meer
Blanchet, C.; Contoux, C.; Leduc, G. (2015). Runoff and precipitation dynamics in the Blue and White Nile catchments during the mid-Holocene: A data-model comparison. Quat. Sci. Rev. 130: 222–230. dx.doi.org/10.1016/j.quascirev.2015.07.014, meer
Carreira, C; Staal, M.; Middelboe, M.; Brussaard, C.P.D. (2015). Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms. Limnol. Oceanogr., Methods 13(4): 169–177. dx.doi.org/10.1002/lom3.10016, meer
Carreira, C; Piel, T; Staal, M.; Stuut, J.-B; Middelboe, M.; Brussaard, C.P.D. (2015). Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats. SpringerPlus 4: 239. dx.doi.org/10.1186/s40064-015-0977-8, meer
Carreira, C; Staal, M.; Falkoski, D.; de Vries, R.P.; Middelboe, M.; Brussaard, C.P.D. (2015). Disruption of photoautotrophic intertidal mats by filamentous fungi. Environ. Microbiol. 17(8): 2910-2921. dx.doi.org/ 10.1111/1462-2920.12835, meer
Carreira, C; Staal, M.; Middelboe, M.; Brussaard, C.P.D. (2015). Counting viruses and bacteria in photosynthetic microbial mats. Appl. Environ. Microbiol. 81(6): 2149-2155. dx.doi.org/10.1128/AEM.02863-14, meer
Kasper, S.; van der Meer, M.T.J.; Castañeda, I.S; Tjallingii, R.; Brummer, G.J.A.; Sinninghe Damsté, J.S.; Schouten, S. (2015). Testing the alkenone D/H ratio as a paleo indicator of sea surface salinity in a coastal ocean margin (Mozambique Channel). Org. Geochem. 78: 62-68. dx.doi.org/10.1016/j.orggeochem.2014.10.011, meer
Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2015). Biogeochemical consequences of vertical and lateral transport of particulate organic matter in the southern North Sea: A multiproxy approach. Est., Coast. and Shelf Sci. 165: 117-127. https://dx.doi.org/10.1016/j.ecss.2015.09.010, meer
Mojica, K.D.A.; van de Poll, W.H.; Kehoe, M.; Huisman, J.; Timmermans, K.R.; Buma, A.G.J.; Van der Woerd, H.J.; Hahn-Woernle, L.; Dijkstra, H.A.; Brussaard, C.P.D. (2015). Phytoplankton community structure in relation to vertical stratification along a north-south gradient in the Northeast Atlantic Ocean. Limnol. Oceanogr. 60(5): 1498–1521. https://dx.doi.org/10.1002/lno.10113, meer
Svensson, E.; Schouten, S.; Stam, A.; Middelburg, J.J.; Sinninghe Damsté, J.S. (2015). Compound-specific stable isotope analysis of nitrogen-containing intact polar lipids. Rapid Comm. Mass Spectrom. 29(23): 2263–2271. dx.doi.org/10.1002/rcm.7393, meer
Blanchet, C.; Frank, M.; Schouten, S. (2014). Asynchronous Changes in Vegetation, Runoff and Erosion in the Nile River Watershed during the Holocene. PLoS One 9(12): e115958. dx.doi.org/10.1371/journal.pone.0115958, meer
Kunihiro, T.; Veuger, B.; Vasquez Cardenas, D.; Pozzato, L.; Le Guitton, M.; Moriya, K.; Kuwae, M.; Omori, K.; Boschker, H.T.S.; Van Oevelen, D. (2014). Phospholipid-Derived Fatty Acids and Quinones as Markers for Bacterial Biomass and Community Structure in Marine Sediments. PLoS One 9(4): e96219. dx.doi.org/10.1371/journal.pone.0096219, meer
Mojica, K.D.A.; Evans, C.; Brussaard, C.P.D. (2014). Flow cytometric enumeration of marine viral populations at low abundances. Aquat. Microb. Ecol. 71(3): 203–209. http://dx.doi.org/10.3354/ame01672, meer
Mojica, K.D.A.; Brussaard, C.P.D. (2014). Factors affecting virus dynamics and microbial host-virus interactions in marine environments. FEMS Microbiol. Ecol. 89(3): 495–515. https://dx.doi.org/10.1111/1574-6941.12343, meer
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Brussaard, C.P.D.; Noordeloos, A.A.M.; Witte, H.; Collenteur, M.C.J; Schulz, K.G.; Ludwig, A.; Riebesell, U. (2013). Arctic microbial community dynamics influenced by elevated CO₂ levels. Biogeosciences 10(2): 719-731. dx.doi.org/10.5194/bg-10-719-2013, meer
Lengger, S.K.; Kraaij, M.; Tjallingii, R.; Baas, M.; Stuut, J.-B.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2013). Differential degradation of intact polar and core glycerol dialkyl glycerol tetraether lipids upon post-depositional oxidation. Org. Geochem. 65: 83-93. dx.doi.org/10.1016/j.orggeochem.2013.10.004, meer
Veuger, B.; Pitcher, A.; Schouten, S.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2013). Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea. Biogeosciences 10(3): 1775-1785. dx.doi.org/10.5194/bg-10-1775-2013, meer
Brandsma, J.; Hopmans, E.C.; Philippart, C.J.M.; Veldhuis, M.J.W.; Schouten, S.; Sinninghe Damsté, J.S.S. (2012). Low temporal variation in the intact polar lipid composition of North Sea coastal marine water reveals limited chemotaxonomic value. Biogeosciences 9(3): 1073-1084. dx.doi.org/10.5194/bg-9-1073-2012, meer
Fallet, U.; Castañeda, I.S; Henry-Edwards, A; Richter, T.O.; Boer, W.; Schouten, S.; Brummer, G.J. (2012). Sedimentation and burial of organic and inorganic temperature proxies in the Mozambique Channel, SW Indian Ocean. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 59: 37-53. dx.doi.org/10.1016/j.dsr.2011.10.002, meer
Liebich, V.; Stehouwer, P.P.; Veldhuis, M. (2012). Re-growth of potential invasive phytoplankton following UV-based ballast water treatment. Aquat. Invasions 7(1): 29-36. dx.doi.org/10.3391/ai.2012.7.1.004, meer
Peterse, F.; van der Meer, J.; Schouten, S.; Weijers, J.W.H.; Fierer, N.; Jackson, R.B.; Kim, J.H.; Sinninghe Damsté, J.S. (2012). Revised calibration of the MBT-CBT paleotemperature proxy based on branched tetraether membrane lipids in surface soils. Geochim. Cosmochim. Acta 96: 215-229. dx.doi.org/10.1016/j.gca.2012.08.011, meer
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